PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011260m
Common NameCARUB_v10011260mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 288aa    MW: 31569.1 Da    PI: 4.3018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011260mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1181126453
              AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                       GVr+++ +gr++AeI+ p     + ++ +lg++gt eeA ka++  + ++
  Carubv10011260m  81 VGVRQRP-SGRFAAEIMNPI----TrTKKWLGTYGTIEEAEKAYVDKKVEY 126
                      7******.7*********83....359*****************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.5E-811275IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.82E-1377119No hitNo description
SMARTSM003802.8E-478128IPR001471AP2/ERF domain
PROSITE profilePS5103212.58979139IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1081126IPR016177DNA-binding domain
PfamPF008471.1E-781121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1282120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKSSVHPKRL LRKVSVIVSD PDATDDDSSG DEWLSLPRPR KVKRIVHEIT FLSEYSESSR  60
DSCNGVKTSR KTSTRQAKYP VGVRQRPSGR FAAEIMNPIT RTKKWLGTYG TIEEAEKAYV  120
DKKVEYDTFA TSCSTVSSSV ISVTSQCLRS PASASVSCVS VDDLSKGKMS LNKDVAASGE  180
STKEVFASFD FSDLQIPDLS FLSAEEDSMV SGANDAELDF DCFLTAESDY LLDDYSLLDD  240
DINISGFENS IPSELPECDF TDMDLALGDL KFAYADQLTP PPNIAFE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011260m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306023.20.0ethylene-responsive transcription factor ERF116
RefseqXP_023645361.10.0ethylene-responsive transcription factor ERF116
RefseqXP_023645362.10.0ethylene-responsive transcription factor ERF116
RefseqXP_023645363.10.0ethylene-responsive transcription factor ERF116
SwissprotQ8GW171e-124EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLR0II300.0R0II30_9BRAS; Uncharacterized protein
STRINGXP_006303610.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.21e-103ERF family protein