PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011173m
Common NameCARUB_v10011173mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 695aa    MW: 76311.7 Da    PI: 6.6617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011173mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069570593123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ykC+ Cgk F++   L  H  t H
  Carubv10011173m 570 YKCSVCGKEFTSFQALGGHKATsH 593
                      9***********999988888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.7E-8209282No hitNo description
SMARTSM003550.026210232IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-12210233IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SMARTSM003550.62260282IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-11260284IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SuperFamilySSF576678.55E-7569640No hitNo description
PfamPF139126.1E-11569594IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346570597IPR007087Zinc finger, C2H2
SMARTSM003550.01570593IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280572593IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286618645IPR007087Zinc finger, C2H2
SMARTSM003550.16618640IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8618642IPR007087Zinc finger, C2H2
PROSITE patternPS000280620640IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDQKALDQCP PLTKLAALKH KFLQQDDLRS YERPKRKISS PPRDDDPSSK RLRIKFRRGR  60
EDGECENDTV LDESPPPRLK SSEPSIRQRS TGDEDHQENE FTSDAVFYKP WLDHLRLKRL  120
RLGDGEDPPS SSSSPSVDDI AALTLIQFSR DKRQTKPQTL IPQPQTPTLI PQPQTQRLKP  180
QPQTLKPQSQ PQPHTETETT EPQGTTCDLF ECSVCGKGFT SYQALGGHKA SHRVKPPQPL  240
VENAGEKTRE KLLAPSGKIH KCSICHVLFP TGQALGGHKR RHYEGVLGGH KHEVVLKLSP  300
NQEQSLSVSD NVVNGLNQEE VVPSSDKCSL SDASTGKKWL DLELSLRKSE GVVDADHRPS  360
QEEVAVEENK WSPSSNGSGV TNVSDPEQSQ RRLIDLNIPL SPESDESGSG EVEEVESTAN  420
QHSQGVDEDS FSQHRFLEGL GQKEEEGFGY GAVSTKTGLE SSVQSQRQRS GDDGDCFSEQ  480
SSSFVETNGR GEKKLGGYAE NDAFIELLLE NIVQSRLQQR LSSSDDDVKA PSSSSSSSLS  540
EVEIATRSHK KEPQKQPKPK PQMLPKSDAY KCSVCGKEFT SFQALGGHKA TSHRVKPLLN  600
DSGEKTGPKT LAPSGKIHQC SVCHKLFPTG PSLGGHKRLH YQGDKLSPSG NADVATNVSD  660
PKQSLEGLVD VNEVPSRGDL VEVKSAKIKF FNFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011173m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644535.10.0uncharacterized protein LOC17900837
TrEMBLR0I2R10.0R0I2R1_9BRAS; Uncharacterized protein
STRINGXP_006303601.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-26zinc-finger protein 2