PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011133m
Common NameCARUB_v10011133mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Nin-like
Protein Properties Length: 267aa    MW: 30423.6 Da    PI: 7.7772
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.6e-26128177352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k++s e +s yF++pi++AAkeL+++lT+LKr+CR++GI+RWPhRk+ sl
  Carubv10011133m 128 KTLSKEIISLYFYMPIAQAAKELNIGLTLLKRRCRELGIQRWPHRKLMSL 177
                      899********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.916108198IPR003035RWP-RK domain
PfamPF020423.7E-21129177IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDSFCKLEDD QVFGKEDNSF CFLNNSSLYS SHQSELANLF YDLEDNFLPY TTNSSNYLLS  60
PSSFMALPDL EPISIVSHDA DLLSGYGSVS WTEEESMFDF DLEKKSETIS TKTKRCREEC  120
VSSCSVSKTL SKEIISLYFY MPIAQAAKEL NIGLTLLKRR CRELGIQRWP HRKLMSLQKL  180
ISNVKELKKM EGEGNEDKLR NALEKLEKEK KLIEELPHLK FGDKTKRLRQ ACFKANHKRK  240
RRHVMSTSIT SSYSSSSSSV SGLSDS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011133m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118095e-97AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026845e-97CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305917.20.0protein RKD1
SwissprotQ9M9U91e-134RKD1_ARATH; Protein RKD1
TrEMBLR0IJY60.0R0IJY6_9BRAS; Uncharacterized protein
STRINGXP_006305917.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-107RWP-RK domain-containing protein