PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011075m | ||||||||
Common Name | CARUB_v10011075mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24606.2 Da PI: 9.2171 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.7 | 4.2e-20 | 56 | 103 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++s+rqvtfskRr g++KK ELSvL++a++avi fs +++y + Carubv10011075m 56 EIIEESKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSRCNRIYRF 103 577899**************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-22 | 47 | 106 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.212 | 47 | 107 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-21 | 48 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-17 | 49 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-20 | 57 | 103 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.35E-19 | 61 | 118 | No hit | No description |
PRINTS | PR00404 | 2.6E-17 | 69 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-17 | 84 | 105 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEEERETSSM TCVTSKDPFQ IPNEAVSKPK KEPTTTTSTT KTPKTTRGRQ KIEIKEIIEE 60 SKRQVTFSKR RRGLFKKSAE LSVLTGAKIA VITFSRCNRI YRFGHVDALI DKYLRNSPVK 120 LEGCSGNNVA EEESKRPWWE RPVESVPEEE LEDYIAALSV LRENLGKKII AMSNDRPVEI 180 VPAWPINMMG WKPTMDMQNM ENPTDGITRC RVGQNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011075m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493462 | 1e-171 | AB493462.1 Arabidopsis thaliana At1g17310 mRNA for hypothetical protein, partial cds, clone: RAAt1g17310. | |||
GenBank | AY141240 | 1e-171 | AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds. | |||
GenBank | BT025284 | 1e-171 | BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-171 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446258 | 1e-171 | DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds. | |||
GenBank | DQ652841 | 1e-171 | DQ652841.1 Arabidopsis thaliana clone 0000016569_0000011566 unknown mRNA. | |||
GenBank | T13M22 | 1e-171 | AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305901.1 | 1e-159 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | R0I8U3 | 1e-157 | R0I8U3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305901.1 | 1e-158 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 1e-105 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011075m |
Entrez Gene | 17899724 |