PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010833m
Common NameCARUB_v10010833mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20833.8 Da    PI: 9.0251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010833mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.3e-161564150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     k+ie +    vt+skR+ngi KK  ELSvLCd++va + +  +gk y++ 
  Carubv10010833m 15 KKIEREEDMLVTLSKRKNGIYKKLCELSVLCDVNVAFLGYTGSGKPYTFG 64
                     5678888889**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-20777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.081767IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-15929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSLKKTKGRQ KINIKKIERE EDMLVTLSKR KNGIYKKLCE LSVLCDVNVA FLGYTGSGKP  60
YTFGSTSFHA VAEHFLNGKA SSSSSSLQRP VDRDYKAKIQ ELCELYNNMI DAVRAEEVKA  120
TKTAASMEPL PEDAWWKVPL AEVKDQEEMK HYLERFERLY EKLSYELAAR RERNNTAEND  180
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010833m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303496.11e-133agamous-like MADS-box protein AGL29
TrEMBLR0I2C31e-132R0I2C3_9BRAS; Uncharacterized protein
STRINGXP_006303496.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-68AGAMOUS-like 64