PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010749m

Common Name

CARUB_v10010749mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 95aa MW: 10343.7 Da PI: 4.4263

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010749m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.6	3.5e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar++dPvyG+vg+i++l++qle l+++la +++e Carubv10010749m 1 MVYEANARVQDPVYGCVGTISSLHRQLEALQTQLAFAQAE 40 69*********************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.391	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-10	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MVYEANARVQ DPVYGCVGTI SSLHRQLEAL QTQLAFAQAE LIHIRSTLCR IDNDTKPPPY 60 TASTVAFPTI KDFSSDVDMA FVYEVGAGDS LWSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010749m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303462.2	6e-65	LOB domain-containing protein 3
Swissprot	Q9SA51	7e-47	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	R0IDT1	1e-64	R0IDT1_9BRAS; Uncharacterized protein
STRING	Cagra.0824s0026.1.p	2e-64	(Capsella grandiflora)
STRING	XP_006303462.1	2e-65	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	3e-49	ASYMMETRIC LEAVES 2-like 9

Link Out ? help Back to Top
Phytozome	Carubv10010749m
Entrez Gene	17897389

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]