PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010471m
Common NameCARUB_v10010471mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 172aa    MW: 20021.6 Da    PI: 9.4316
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010471mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.71.6e-24353258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     ++++Y+eC++NhAa+lG++a+DGC E+ +s      +++  CaACgCHR++HRr  +
  Carubv10010471m  3 SSCVYRECMRNHAAKLGSYAIDGCLEYSQS------VTGDLCAACGCHRSYHRRVDV 53
                     5789************************99......7788**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-19450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-18651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.947751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.7E-1795168IPR009057Homeodomain-like
SuperFamilySSF466891.97E-7100167IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-31109168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCLEYS QSVTGDLCAA CGCHRSYHRR VDVVSSSQIT  60
RTRFPFTSLR RVKQLARLKW KTAEERNKNA EEEEDDTEET STEEKMTVQR RAKSKFTAEQ  120
REAMKDYAAK LGWTLKDKRA IREEIRVFCE GIGVSRYHFK TWVNNNKKFY H*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010471m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069171e-173AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865231e-173AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039421e-173BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050271e-173BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026841e-173CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305721.11e-126zinc-finger homeodomain protein 14
SwissprotQ9LQW32e-97ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLR0I8E91e-125R0I8E9_9BRAS; Uncharacterized protein
STRINGCagra.3501s0025.1.p1e-125(Capsella grandiflora)
STRINGXP_006305721.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-97homeobox protein 32