PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010416m
Common NameCARUB_v10010416mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 181aa    MW: 20722.3 Da    PI: 10.4244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010416mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-051660251
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                     r+  n rE+ RR r+++ f+ L + + +       Kl   +   +A+ Y+
  Carubv10010416m 16 REQRNLREKDRRMRMKHLFSILSSYVSPT-----HKLPVPQLIDQATAYM 60
                     7889********************99885.....3666666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-101479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3091463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGKARGIGEG KLSSLREQRN LREKDRRMRM KHLFSILSSY VSPTHKLPVP QLIDQATAYM  60
IKLKGKVDYM KEKKRTLLQL GELGNAYQAS FLQPKLSIRS RHSTIEMNLI VDLNMKRVML  120
HELMSVFEEE GAQVMSANLQ NLNDKTTYTI IAQAMISRIG IDPSSIEERV RTIIYGYIMF  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010416m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0509591e-121AY050959.1 Arabidopsis thaliana unknown protein (At1g10585) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304235.11e-130transcription factor bHLH167
SwissprotF4I4E11e-107BH167_ARATH; Transcription factor bHLH167
TrEMBLR0IJL11e-129R0IJL1_9BRAS; Uncharacterized protein
STRINGXP_006304235.11e-129(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-110bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]