PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010317m
Common NameCARUB_v10010317mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 205aa    MW: 22135.7 Da    PI: 5.7893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010317mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19553153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                     ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  Carubv10010317m  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53
                     59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-33563No hitNo description
Gene3DG3DSA:3.30.730.104.5E-33664IPR001471AP2/ERF domain
SMARTSM003804.7E-41669IPR001471AP2/ERF domain
PROSITE profilePS5103222.155663IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-21664IPR016177DNA-binding domain
PfamPF008471.6E-12650IPR001471AP2/ERF domain
PRINTSPR003671.3E-10718IPR001471AP2/ERF domain
PRINTSPR003671.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPLTNNNSN NTGDTAEGKT DISSSSSISS SSSSLSTILS AKLRKCCKSP SPSLTCLRLD  120
TASSHIGVWQ KRAGSKSDSS WVMTVELGSA SSSRETTSKA PQEDLGPTTE LEVEVEVGGG  180
GEEGLIDEEE KVALQMIEEL LNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-17267167ATERF1
3gcc_A1e-17267167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010317m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305625.11e-147ethylene-responsive transcription factor WIN1
SwissprotQ9XI331e-108WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLR0IN581e-146R0IN58_9BRAS; Uncharacterized protein
STRINGXP_006305625.11e-147(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.16e-74ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]