PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010113m | ||||||||
Common Name | CARUB_v10010113mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | DBB | ||||||||
Protein Properties | Length: 248aa MW: 27502.9 Da PI: 5.3203 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++ C ++ lC++C e+H H+ Carubv10010113m 4 QCDVCEKAPATVICCADEAALCPNCDIEIHAAnklaskHQ 43 7*****************************6566676765 PP | |||||||
2 | zf-B_box | 30.3 | 8.5e-10 | 55 | 86 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+ ++ek + +fC +++ llC+dC +++H Carubv10010113m 55 PRCDICQEKAAFIFCVEDRALLCRDCDESIHV 86 79*****************************4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.214 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.13E-5 | 3 | 45 | No hit | No description |
SMART | SM00336 | 3.8E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.684 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-16 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-7 | 55 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.11E-8 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKIQCDVCEK APATVICCAD EAALCPNCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC 60 QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT GIKVALTSTS CNKELEKNHT 120 EPSNNQQKAS QIPAKTPSQQ HQPASATPLP WAVDDFLHFS DIESTDKKGQ LDLGAGEFEW 180 FSDMGFFGDQ INQEALPAAE VPELSVSHLG HVHSYKPMKS NVPYKKPRFD IRDDDDDEEH 240 FIVPDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010113m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045794 | 0.0 | AY045794.1 Arabidopsis thaliana putative salt-tolerance protein (At1g06040) mRNA, complete cds. | |||
GenBank | AY079377 | 0.0 | AY079377.1 Arabidopsis thaliana putative salt-tolerance protein (At1g06040) mRNA, complete cds. | |||
GenBank | X95572 | 0.0 | X95572.1 A.thaliana mRNA for salt-tolerance protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303301.1 | 0.0 | B-box zinc finger protein 24 | ||||
Swissprot | Q96288 | 1e-161 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | R0I1T1 | 0.0 | R0I1T1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303301.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2711 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 1e-149 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010113m |
Entrez Gene | 17900137 |
Publications ? help Back to Top | |||
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