PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010013m | ||||||||
Common Name | CARUB_v10010013mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 270aa MW: 30164.5 Da PI: 4.7918 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.6e-31 | 75 | 133 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+ Carubv10010013m 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 133 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-32 | 66 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.294 | 69 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 70 | 135 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-38 | 74 | 134 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 76 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKRCLDQMAR GYNDHESSQE TGPESPNSST FSDMKALISS HSPKRSRRSV DKRVVNVPMK 60 EMEGSRHKGD TTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSTKGCPARK QVERSRDDPT 120 MILITYTSEH NHPWPAASSS RNGPKPKPEA KPEPEPEVEP EVEVDVEVEE EDDKFMVLGR 180 EIETTPSCVD EFAWFTEMET TSSTILESPI FSSSSEKKTA VTAASDDVAV FFPMGEEDES 240 LFADLGELPE CSVVFRHRSS VVGSQVEIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-21 | 52 | 135 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-21 | 52 | 135 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010013m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304099.1 | 0.0 | probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 1e-157 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | R0GM56 | 0.0 | R0GM56_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304099.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-137 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010013m |
Entrez Gene | 17900197 |
Publications ? help Back to Top | |||
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