PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009894m
Common NameCARUB_v10009894mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 295aa    MW: 33369.4 Da    PI: 10.0146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009894mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08189236455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Carubv10009894m 189 SHSLAERVRRGKINERLRCLQDMVPGC----YKAMGMATMLDEIINYVQSLQ 236
                      8*************************8....355999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16183253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-10183240No hitNo description
Gene3DG3DSA:4.10.280.103.0E-16185246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-9191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
KFSLKKLKKK KKTASRKKNI SHFSIIGLMA NFENLSSEFQ TIAMDIYSSI TQAADLNNNN  60
NSNLHNFQTF HPSSTSLESL FLHHHHQQQQ QLLHIHGNSP DNSNNVSPTS SFIHSDDHSN  120
VDETKKRKAL LHSLSSSENS TGVSHIINTA ETGTLRRGKR LKKKKEEEEE GKEREVVHVR  180
ARRGQATDSH SLAERVRRGK INERLRCLQD MVPGCYKAMG MATMLDEIIN YVQSLQNQVE  240
FLSMKLTAAS SFYDFNSETD AVDSMQRAKA RETVEMGRQT RDGSPVFHLS TWSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517KLKKKKKTASRKK
2717KKKKKTASRKK
3159165RLKKKKE
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009894m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172690.0AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBankAY1382530.0AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankBT0052680.0BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305468.20.0transcription factor BEE 1
SwissprotQ8GZ131e-129BEE1_ARATH; Transcription factor BEE 1
TrEMBLR0GRE80.0R0GRE8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305468.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-121BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]