PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009617m
Common NameCARUB_v10009617mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 347aa    MW: 39701.1 Da    PI: 8.3476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009617mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05189208120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  Carubv10009617m 189 FACSICSKTFNRYNNMQMHM 208
                      78*****************9 PP
2zf-C2H210.90.0015274296123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk    k + ++H +++
  Carubv10009617m 274 FSCGKCGKALAVKGDWRTHEKNC 296
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-9168212No hitNo description
PROSITE profilePS5015710.45189216IPR007087Zinc finger, C2H2
SMARTSM003550.17189211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SMARTSM00355170237269IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.85E-5259294No hitNo description
Gene3DG3DSA:3.30.160.609.6E-4260294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190274294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538294327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSLMNPYETK CLGFESPSFI EWLKPSSSSS SCPSVLYRMK TRDAISRSSN HHQSQMNMLE  60
RSLFLYQPQE QPLNTSIQCL PLLNKLMENN SRRQTLEDIK EESKDDVVTL QIGFPDYHRG  120
NSVEDESDTT SDHQEKPIKR EMVEDGVVMM NKRRKMKFDA EMIDSDMEVC GKRFWIPSPA  180
QIHVGPMQFA CSICSKTFNR YNNMQMHMWG HGSEFRKGAD SLKGTTQPAA ILRLPCYCCA  240
EGCKNNINHP RSKPLKDFRT LQTHYKRKHG SKPFSCGKCG KALAVKGDWR THEKNCGKLW  300
YCTCGSDFKH KRSLKDHIRS FGSGHSPHPS LSFEGFEEDT ECVTTE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009617m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305247.10.0zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLR0II760.0R0II76_9BRAS; Uncharacterized protein
STRINGXP_006305247.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]