PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009514m
Common NameCARUB_v10009514mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 366aa    MW: 40114.6 Da    PI: 5.791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009514mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10214262355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Carubv10009514m 214 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 262
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17209279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-11209266No hitNo description
PROSITE profilePS5088815.485211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17212279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7214262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGGESNEGEM GFKHGDDESG ISRVGITPMP LYAKADPFFS SADWDPVVNG AGGFSSSHYP  60
SMAMDNPGMS CFSHYQPGSG SGYAAEMPPS LLPFGDCGGG QIGHFLGSDK KGESVGRLIR  120
AGESHHEDHH QVSDDGVLGA SPIGKRRLPE AESQWNKKAV EEFQEDPQRG SDQSQKKHKN  180
DQSKETVNKE SSQSEEAPKE NYIHMRARRG QATNSHSLAE RVRREKISER MRLLQELVPG  240
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPEIN VDIDRILAKD LLQSRDRNTP  300
TLGLNPFTGF QGTIPNLSTT TNPQYNSLPQ TTLESELQNL YQMGFVSNPS TMSSFSPNGR  360
LKPEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009514m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645253.10.0transcription factor bHLH74
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLR0I6X00.0R0I6X0_9BRAS; Uncharacterized protein
STRINGCagra.4395s0200.1.p0.0(Capsella grandiflora)
STRINGXP_006305146.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]