PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009393m
Common NameCARUB_v10009393mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 391aa    MW: 40916.1 Da    PI: 8.122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009393mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0992115125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +kt+lC+ f++ GtC+y  +C+FaH
  Carubv10009393m  92 FKTKLCCKFRA-GTCPYVTNCNFAH 115
                      69*********.************* PP
2zf-CCCH42.51e-13266291126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Carubv10009393m 266 WKTRICNKWEITGYCPFGAKCHFAHG 291
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1389124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-789122IPR000571Zinc finger, CCCH-type
SMARTSM003560.003991117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67191118IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-792115IPR000571Zinc finger, CCCH-type
SMARTSM003560.47172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8173199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-10261296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17261295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178265293IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9265292IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSHHRRDSGG DVVHVIPTNN PPPENWFPNL GDSAVWATED DYNRAWAVNP DNVSGDNNGP  60
PNKKTRGSPS SSSATTTSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL  120
RRPPPNWQEI VAAHEEERSG GMGTPTVAVP EVPREEFQIP SLVSSTAESG RSFKGRHCKK  180
FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGG GGGGVGSGGG SASGGGGGGN  240
SNVVVLGGGG GTGSGSGIHI VKPSNWKTRI CNKWEITGYC PFGAKCHFAH GAAELHRFGG  300
GLVEGEGKDG VSPNSDTKQT GQTPKGNSET PTLLSPGGVP HQADPSYHSG VALQRATSAV  360
TQKPGIRTHQ KWKGPAKISR IYGDWIDDIE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009393m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305028.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLR0GQ620.0R0GQ62_9BRAS; Uncharacterized protein
STRINGXP_006305028.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein