PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009313m | ||||||||
Common Name | CARUB_v10009313mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 409aa MW: 46811.1 Da PI: 6.9942 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.7 | 1.2e-26 | 89 | 170 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++ s +++y++++e Carubv10009313m 89 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 170 ********************************************************************84...566899***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-4 | 79 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 81 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0096 | 85 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.40E-30 | 87 | 152 | No hit | No description |
Pfam | PF13837 | 4.3E-20 | 88 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MFISDKSRPT DFYKDDNPNS STAATRDMMI DVTTPNEAVV DLQPHHHHHH HHHNHNHHLN 60 QSQPQQILLG DSSSEDHEVK APKKRAETWV QDETRSLIMF RRGMDGLFNT SKSNKHLWEQ 120 ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKYHDRGNGS AKMSYYKEIE DILRERSKKV 180 TTTQYNKSPS TPPPTTAKVD SFMQFSDKGF DDTSISFGSV EANGRPALNL ERRLDHDGHP 240 LAITTVDAVA ANGVTPWNWR ETPGNGGDGH GQPFGGRVIT VKFGDYTRRI GIDGSCEAIK 300 EAIRSAFGLR TRRAFWLEDE DQIVRSLDRE MPLGNYLLHL DDGLAIRVCH YDESNQLPVH 360 SEEKIFYTEE DYRDFLARRG WTCLQVDGFR NIENMDDLQP GAVYRGVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-55 | 83 | 168 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009313m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228305 | 0.0 | AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307687.1 | 0.0 | trihelix transcription factor GT-1 isoform X1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | R0IPF9 | 0.0 | R0IPF9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307687.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009313m |
Entrez Gene | 17899474 |
Publications ? help Back to Top | |||
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