PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009193m
Common NameCARUB_v10009193mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 433aa    MW: 48695.2 Da    PI: 8.3595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009193mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021931123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C k+F++  +L  Hir H
  Carubv10009193m  9 FVCKFCFKVFPSGKSLGGHIRIH 31
                     89*******************99 PP
2zf-C2H211.50.000916885320
                     ETTTTEEESSHHHHHHHH CS
          zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                     C  Cgk F + + L +H+
  Carubv10009193m 68 CRECGKGFVSMEALSVHM 85
                     88***************9 PP
3zf-C2H212.80.00036128149223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+dC++ F +   L +H+  H
  Carubv10009193m 128 FCKDCDRGFVSFKALSVHMAFH 149
                      6******************988 PP
4zf-C2H211.90.0007382404123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F++   L  H r+H
  Carubv10009193m 382 HECPICFRVFKSGQALGGHKRSH 404
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.54E-7731No hitNo description
PfamPF139124.1E-5929IPR007087Zinc finger, C2H2
SMARTSM003550.058931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-76188No hitNo description
PROSITE profilePS5015710.1386693IPR007087Zinc finger, C2H2
SMARTSM003550.146688IPR015880Zinc finger, C2H2-like
PfamPF139120.0136790IPR007087Zinc finger, C2H2
PROSITE patternPS0002806788IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-56893IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.39E-7126149No hitNo description
PROSITE profilePS501579.307127154IPR007087Zinc finger, C2H2
SMARTSM003550.16127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576677.39E-7377404No hitNo description
PfamPF139121.9E-10382404IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265382405IPR007087Zinc finger, C2H2
SMARTSM003550.14382404IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280384404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEEEKEKKFV CKFCFKVFPS GKSLGGHIRI HSNENFVDSD RYNGSYKKKK RLVDQREKQQ  60
QQQQQVCCRE CGKGFVSMEA LSVHMACHSE GEKMLIDYQS DTESETSSAP TRKRSRRVID  120
QKHKQQHFCK DCDRGFVSFK ALSVHMAFHS EGEKMLMDSQ SDTETYSAPT GKRSKRVMRR  180
SNSESFSSGS LSFASDIDQE DGEGAYTLVM LSRDFSYKKK CNLVMNSLGE SSDNNSGIVE  240
TKSSSGEELK TLNVKKQILE IDKVVDDDQL RSAYSNGVSL CDSDGSDSDY FMNGPKESDS  300
DISVDGSLRN TGFGSGFNNS LNILKNSDER RSKYELSKSK RVLFSYETDS CANTNSKIHR  360
YRDSKSPVVK KAGVEKKKSK GHECPICFRV FKSGQALGGH KRSHSFGNQE HNQASEMRNR  420
IDLNVPASDI DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009193m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307570.10.0zinc finger protein ZAT9
TrEMBLR0ISX20.0R0ISX2_9BRAS; Uncharacterized protein
STRINGXP_006307570.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-120C2H2-like zinc finger protein