PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009151m | ||||||||
Common Name | CARUB_v10009151mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 443aa MW: 50672.1 Da PI: 6.3747 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.1 | 9e-27 | 114 | 208 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a++++++++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d+ Carubv10009151m 114 KWTDKMVKLLITAVSYIGDDSTMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDS 207 7**************8877777654456677888**********************************************66999999888876 PP trihelix 85 l 85 + Carubv10009151m 208 I 208 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-24 | 112 | 235 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDGNFPQGGV VRGGASSYGG FDLQGSMRVH HPESMNQHRH NPNSRPLHEG LPFTMVTGQT 60 CDHHQNISVA EQHKGEREKN SVSDDDEPSF TEEGGDGPNE ANKSTKGSPW QRVKWTDKMV 120 KLLITAVSYI GDDSTMDSGS RRKFAVLQKK GKWKSVSKVM AERGYHVSPQ QCEDKFNDLN 180 KRYKKLNDML GRGTSCQVVE NPALLDSIGY LNEKEKDDVR KIMSSKHLFY EEMCSYHNGN 240 RLHLPHDLAL QRSLQLALRN RDDHDNEDSR KHQMEDLDDE DHDGEGDEHD EYEEQHYSHG 300 DCRGIHYGGG GLGGGPLKKI RQSHSHEDAD HPSHVNSLEC NKVSLPQMPF SQADVNQGGA 360 ESGRSASMQK QWMESRTLQL EEQKLQIQVE LLELEKQRFR WQRFSKKRDQ ELERMRMENE 420 RMKLENDRMG LELKQRELGV EL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009151m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045850 | 0.0 | AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | AY091378 | 0.0 | AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F16F4 | 0.0 | AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307528.1 | 0.0 | uncharacterized protein LOC17897295 | ||||
TrEMBL | R0GX82 | 0.0 | R0GX82_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307528.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5042 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 0.0 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009151m |
Entrez Gene | 17897295 |