PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009023m
Common NameCARUB_v10009023mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 477aa    MW: 51171.9 Da    PI: 9.3544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009023mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0587109123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Carubv10009023m  87 FICEVCNKGFQREQNLQLHRRGH 109
                      89*******************88 PP
2zf-C2H212.80.00035163185123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  Carubv10009023m 163 WKCDKCSKRYAVQSDWKAHSKTC 185
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-686109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-786109No hitNo description
SMARTSM003550.005287109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9987109IPR007087Zinc finger, C2H2
PfamPF121712.2E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355120128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-7158183No hitNo description
SMARTSM00355140163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSSSYNNSIA SSSTQSFLLS GAAAAASGVG ATNFNRDQEP PMTMLQPPPN STVAPPPKKR  60
RNQPGNPNPD AEVIALSPKT IMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSN  120
KEVRRKVYLC PEPSCVHHDP ARALGDLTGI KKHYYRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTKEY RCDCGTIFSR RDSYITHRAF CDALIQESAR NPTVSFTAMA AAGGGAGRHG  240
FFGGAASALS HNHFGGTSAS GFTSLAASYN LNRSSSDKFE EYAPQSANPN PGGPPNFLMQ  300
CAANQGLLAQ NDQGLMNQHG LMNLGDHNLN SNNNNLFNLG YFQDTKNPNQ TSVPSLFTGG  360
GADNNDSSAL LRGLPPSSPS SVVVNDYGDT GNGNLQGLIM NTLADSSDHQ SRSGSIFDLH  420
FGSNLSMGGS DRLTLDFLGV NGGGMVSTVN GRGGRNGAPL DTEMKFSHPN HPFGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34159225369Zinc finger protein JACKDAW
5b3h_F4e-34159225369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009023m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307394.20.0LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLR0GWH30.0R0GWH3_9BRAS; Uncharacterized protein
STRINGXP_006307394.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]