PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10008456m

Common Name

CARUB_v10008456mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 711aa MW: 82178.2 Da PI: 6.5097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10008456m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69	1.1e-21	100	183	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l Carubv10008456m 100 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 183 69***************************************9988.....999******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-19	100	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-24	303	395	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	590	626	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-5	598	622	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-6	601	628	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MERSESVDED VQASEYLQND EIPERDDPLS DGGCALPIDE ALVCSSDHEI DVGFCQDQER 60 KSEDDATGEF DEQSGLLAER KDFDAPAVGM EFESYDDAYN YYNCYATEVG FRVRVKNSWF 120 KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN 180 HLLGAKLYKS VKKNGTGTKR KCVSSPVSDA KTIKLYRARV MDTENSVDPN STLKKQFQNS 240 AGSPDLLNLK KGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GQLRNVFWAD AFSKISCSYF 300 GDVIFIDNSY ISGKFEIPLV TFTGVNHHGQ TTLLSCGLLA GETIESYHWL LKVWYNVMKC 360 SPQTIVTDRC KPLEAAISQV FPRSHHRFTL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE 420 TLKVVEFEAA WGFMVHNFGV IDNEWLRSLY EERVKWAPVY LKDTFFAGIA AAHPGETLNP 480 FFERYVHKQT PLKEFLDKYE LALQKKHKEE TLSDIESLTL NTLELKTKCS FETQLCRIYT 540 RNMFKKFQVE VEEMYSCFST TQLHVDGPFV IFLVKERVQG ESNRREIRDF EVLYNRSVGE 600 VRCICSCFNF YGYLCRHALC VLNFNGIEEM PLRYILPRWR KDYKRVYFAD NDSTTGFVDG 660 TDRVQWFDQL YKNALQLVEE GAVSLNHYKV AMQSLEQSLD KVHSVEEKQE *

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MERSESVDED VQASEYLQND EIPERDDPLS DGGCALPIDE ALVCSSDHEI DVGFCQDQER  60
KSEDDATGEF DEQSGLLAER KDFDAPAVGM EFESYDDAYN YYNCYATEVG FRVRVKNSWF  120
KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN  180
HLLGAKLYKS VKKNGTGTKR KCVSSPVSDA KTIKLYRARV MDTENSVDPN STLKKQFQNS  240
AGSPDLLNLK KGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GQLRNVFWAD AFSKISCSYF  300
GDVIFIDNSY ISGKFEIPLV TFTGVNHHGQ TTLLSCGLLA GETIESYHWL LKVWYNVMKC  360
SPQTIVTDRC KPLEAAISQV FPRSHHRFTL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE  420
TLKVVEFEAA WGFMVHNFGV IDNEWLRSLY EERVKWAPVY LKDTFFAGIA AAHPGETLNP  480
FFERYVHKQT PLKEFLDKYE LALQKKHKEE TLSDIESLTL NTLELKTKCS FETQLCRIYT  540
RNMFKKFQVE VEEMYSCFST TQLHVDGPFV IFLVKERVQG ESNRREIRDF EVLYNRSVGE  600
VRCICSCFNF YGYLCRHALC VLNFNGIEEM PLRYILPRWR KDYKRVYFAD NDSTTGFVDG  660
TDRVQWFDQL YKNALQLVEE GAVSLNHYKV AMQSLEQSLD KVHSVEEKQE *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10008456m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY080775	0.0	AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.
GenBank	AY133776	0.0	AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306897.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	R0IMD0	0.0	R0IMD0_9BRAS; Uncharacterized protein
STRING	XP_006306897.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Carubv10008456m
Entrez Gene	17899067

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]