PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007825m
Common NameCARUB_v10007825mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 273aa    MW: 29816.1 Da    PI: 6.5383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007825mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-19136185255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  Carubv10007825m 136 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 185
                      8********.**********83....57*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-37136199IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21136194IPR016177DNA-binding domain
PfamPF008473.8E-12136184IPR001471AP2/ERF domain
PROSITE profilePS5103224.012136193IPR001471AP2/ERF domain
PRINTSPR003671.5E-11137148IPR001471AP2/ERF domain
CDDcd000187.76E-21137193No hitNo description
Gene3DG3DSA:3.30.730.106.2E-32137193IPR001471AP2/ERF domain
PRINTSPR003671.5E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MHYPNNRTGF VGAPSSTRIR YQKEQLSPEQ ELSVIVSALQ HVMSGEKDTA PFQGFSGDST  60
VISAGMPRSD SDTCQVCRIE GCLGCDYFFT PNQRVEKIQQ EEEITSGSRR ESPTAPAAKK  120
AEGGGKIRKR KNKKNGYRGV RQRPWGKFAA EIRDPKRATR VWLGTFETAE DAARAYDRAA  180
IGFRGPRAKL NFPFVDYTSS VSSPAAADDV GANASVNASA SVSATDSVEA EQWRGREGGD  240
CNMEEWMNMM MMMDFGNGDS SDSGNTIADM FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-25133194264ATERF1
3gcc_A9e-25133194264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007825m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250910.0AF325091.1 Arabidopsis thaliana putative protein (F10M10.180) mRNA, complete cds.
GenBankAL0355210.0AL035521.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project).
GenBankAL1615850.0AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.
GenBankAY0641510.0AY064151.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankAY1207000.0AY120700.1 Arabidopsis thaliana AT4g34410/F10M10_180 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282971.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-130EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLR0GGG60.0R0GGG6_9BRAS; Uncharacterized protein
STRINGXP_006282971.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-93redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]