PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007553m | ||||||||
Common Name | CARUB_v10007553mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 348aa MW: 39747.4 Da PI: 9.7199 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.9e-16 | 14 | 92 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl + s+ l +p kf++++ +g e+kt+ le+ s +sW+v++ ++++ lt GWkeF+++++L+ gD+++F+++g Carubv10007553m 14 FFKVL--LPGFDSN-LNIPMKFFSAYiEGR-YEGKTVELESdASEKSWKVEM--EGRR----LTFGWKEFASSHDLRIGDVIIFRHQGA 92 78888..6677777.99*********7444.57789***997889*******..8888....9**********************7653 PP | |||||||
2 | B3 | 66.8 | 3.2e-21 | 130 | 216 | 8 | 95 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 s+v+ ++l +pkkfa++ ++k +s ++l++e ++W++ l++r +s+++++++GW++F+++ngLk gD v+F+l++++ ++++++ Carubv10007553m 130 SSVHGIHILFFPKKFATSGALIK-GSNNIVLMNEVAKKWRLILKFRESSRTFYMRDGWRSFCHENGLKPGDAVTFELESNNLKTPLLR 216 78888999********9998887.567**************************************************98877667665 PP | |||||||
3 | B3 | 47.9 | 2.4e-15 | 248 | 335 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +s+ lpk+f++ + +++ +++tl d++g+ W v+l +++ ++ l+ G k+F kang k+++++vF+l+++ +++ +++++++ Carubv10007553m 248 SSSVTHLPKNFVKVNRMENLARRKITLLDKHGKDWAVTLVRERRNTQTRLGFGLKDFFKANGTKANESLVFELVWEdKTTLPLLRFCS 335 344457******999777778889***************888888889**************************99777777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-22 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-22 | 8 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.534 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-16 | 12 | 100 | No hit | No description |
Pfam | PF02362 | 4.2E-11 | 14 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-21 | 14 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.593 | 123 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-17 | 126 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-19 | 130 | 216 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-18 | 130 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.88E-18 | 130 | 211 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-16 | 131 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 237 | 336 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-13 | 242 | 337 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 249 | 335 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-13 | 249 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-12 | 249 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.07E-11 | 254 | 324 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MADPVLQSPE NPHFFKVLLP GFDSNLNIPM KFFSAYIEGR YEGKTVELES DASEKSWKVE 60 MEGRRLTFGW KEFASSHDLR IGDVIIFRHQ GALLFHVACF GPSCCEIQYR QSCNDDDHLY 120 DDQENLSKLS SVHGIHILFF PKKFATSGAL IKGSNNIVLM NEVAKKWRLI LKFRESSRTF 180 YMRDGWRSFC HENGLKPGDA VTFELESNNL KTPLLRFSTA EFTSVSTKDC NKLGKINKSG 240 DSQKVSSSSS VTHLPKNFVK VNRMENLARR KITLLDKHGK DWAVTLVRER RNTQTRLGFG 300 LKDFFKANGT KANESLVFEL VWEDKTTLPL LRFCSNAKTY SKLRPSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007553m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634987.1 | 1e-114 | LOW QUALITY PROTEIN: B3 domain-containing protein REM7 | ||||
Swissprot | Q8H2D0 | 6e-82 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | R0H2N7 | 0.0 | R0H2N7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286022.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 4e-84 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007553m |
Entrez Gene | 17878425 |
Publications ? help Back to Top | |||
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