PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007459m
Common NameCARUB_v10007459mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 454aa    MW: 49990.5 Da    PI: 6.5232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007459mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.6e-15263310355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++hn  ErrRR++iN+++ +L+el+P +     +K +Ka++L  ++eY+k Lq
  Carubv10007459m 263 EMHNLSERRRREKINERMKTLQELIPRC-----RKSDKASMLDDVIEYLKGLQ 310
                      58*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.866260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-16263314No hitNo description
SuperFamilySSF474591.16E-19263337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-12263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-20264320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
GEDDLVELLW KSGQVVRSSQ TQRPSSDEPS PPPPPILRGS GSGGGGEENA SLPLPHLQPQ  60
PHMHQQNLFI QEDEMASWLY HSYRQDYFSS ELLYPQSSVS LAPTPSALYT LPPERPTGQI  120
LAVTRAENLM NFSWLRSLYA SGSVEVGQSM QVGSSATPVV RESMQVGSSA TPESCVIPAT  180
EGTESRVSRT FVVPGPGRKG KAVAIETART PSSGVCKVEP DPIQVQPATE TEKLKEREET  240
IAGIQRTEEA RGSASRKRSR AAEMHNLSER RRREKINERM KTLQELIPRC RKSDKASMLD  300
DVIEYLKGLQ SQVQMMSTGQ GMMPPMMYAG NMQQFMPQMG MGMMGMNQPP PFIPFNRPPH  360
IAGLGPQYPA PRYPFPNIQT SDPSIVHLPT PQPNMVSNQP QFPVYMNPNS QFPGLHQMQQ  420
LPPPLQSQTT SQMSISQAST SKELEDQDNQ PTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255272RKRSRAAEMHNLSERRRR
2268273ERRRRE
3269274RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007459m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775865e-58AJ577586.1 Arabidopsis thaliana mRNA for putative bHLH127 transcription factor (bHLH127 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282937.20.0putative transcription factor bHLH056 isoform X1
RefseqXP_023634848.10.0putative transcription factor bHLH056 isoform X2
SwissprotQ9SVU71e-177BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0GU450.0R0GU45_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282937.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-114bHLH family protein