PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10007337m | ||||||||
Common Name | CARUB_v10007337mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27000.2 Da PI: 9.4502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed +l + v+q+ g W++Ia+ + gRt+kqc++rw+++l Carubv10007337m 56 KGKWAKSEDMKLNQMVEQYDGIvKWTSIAKNLK-GRTGKQCRERWHNHL 103 79******************88**********9.*************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 110 | 151 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE ++lv ++k G++ W +I+++++ gRt++++k+rw+ Carubv10007337m 110 TAWTEEENQILVAVHKVVGTK-WYSISQHLP-GRTENNIKNRWN 151 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.45E-8 | 42 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.93 | 51 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-12 | 55 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 57 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.19E-11 | 58 | 103 | No hit | No description |
Pfam | PF13921 | 8.9E-15 | 59 | 116 | No hit | No description |
SuperFamily | SSF46689 | 1.15E-27 | 83 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.184 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-13 | 108 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 111 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.97E-9 | 111 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGEPQSFDMP VPEDIKNTTS DIMNQGEGQK MVRTHQKKNK KIVETSNHSK ETNIIKGKWA 60 KSEDMKLNQM VEQYDGIVKW TSIAKNLKGR TGKQCRERWH NHLRPGIKKT AWTEEENQIL 120 VAVHKVVGTK WYSISQHLPG RTENNIKNRW NATKRRVQNQ SGENSNLADN NVLENYIRYV 180 TINNDNLSKT TEDVNLNMDV GTQTNEPLVN ASTTSYYVPM PENFTWENYI TEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-38 | 53 | 156 | 4 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10007337m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285855.2 | 1e-171 | transcription factor MYB115 | ||||
TrEMBL | R0H5C9 | 1e-172 | R0H5C9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285855.1 | 1e-172 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13303 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40430.1 | 7e-85 | myb domain protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10007337m |
Entrez Gene | 17878720 |