PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G40430.1 | ||||||||
Common Name | AtMYB22, MYB22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 30087.8 Da PI: 6.0085 | ||||||||
Description | myb domain protein 22 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++rWT+ Ed +l++ v++ +++ W+++a+++ gRt+kqc++rw+++ AT5G40430.1 54 KKRWTESEDIKLKEMVALEPKK-WTKVAKHFE-GRTPKQCRERWHNH 98 68********************.*********.************97 PP | |||||||
2 | Myb_DNA-binding | 43.6 | 6.8e-14 | 106 | 149 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++eEd++l++++k G + W I++ ++ gR+ +++k++w++ AT5G40430.1 106 TTWSEEEDQILIEVHKVIGAK-WIQISEQLP-GRSYNNVKNHWNTT 149 68*******************.*********.************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.749 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 53 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-11 | 56 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-21 | 56 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.9E-15 | 57 | 114 | No hit | No description |
SuperFamily | SSF46689 | 1.05E-26 | 79 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.774 | 104 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-12 | 104 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 104 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-7 | 107 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGEPQLFDVP VLEGIKNTTN EIMNQLEDDK MKKTYENKKE ASTSKYLKKS DITKKRWTES 60 EDIKLKEMVA LEPKKWTKVA KHFEGRTPKQ CRERWHNHAR PNVKKTTWSE EEDQILIEVH 120 KVIGAKWIQI SEQLPGRSYN NVKNHWNTTK RRVQNKSGRT VNRVGNNILE NYIRSITINN 180 DDESDGEPTN IENYHDDSED MLYGEMNLSP EAITQTTKPL TDASTISPYI PMPKENYTLE 240 VCESLEDYLE LLRWWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 51 | 152 | 4 | 106 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5823304 | 0.0 | ||||
Genevisible | 249352_at | 0.0 | ||||
Expression Atlas | AT5G40430 | - | ||||
AtGenExpress | AT5G40430 | - | ||||
ATTED-II | AT5G40430 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB22). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G40430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G40430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175986 | 0.0 | AF175986.1 Arabidopsis thaliana putative transcription factor (MYB22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_568582.1 | 0.0 | myb domain protein 22 | ||||
TrEMBL | A0A178UAQ0 | 0.0 | A0A178UAQ0_ARATH; MYB22 | ||||
TrEMBL | Q9SPH0 | 0.0 | Q9SPH0_ARATH; At5g40430 | ||||
STRING | AT5G40430.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17910 | 6 | 9 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT5G40430.1 |
Entrez Gene | 834041 |
iHOP | AT5G40430 |
wikigenes | AT5G40430 |
Publications ? help Back to Top | |||
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