PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007070m
Common NameCARUB_v10007070mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SAP
Protein Properties Length: 378aa    MW: 42508 Da    PI: 6.9327
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007070mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP6435.4e-196137679454
              SAP  79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGav 172
                      vc+tw+avsrsd+lwq l+r++W+rt+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde   +d+l+Crcl+lsd ylaaGfadG+v
  Carubv10007070m   1 VCTTWQAVSRSDHLWQLLCRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDE---PDSLLCRCLTLSDLYLAAGFADGTV 91 
                      8*************************************************************9998...689********************** PP

              SAP 173 rlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266
                      rlf l++rlhv+t++p  rdr+GrfsravsGivis+srl+fat+dGdihva+idg  ++++r+a++Gd+vndGalvdfaG+grWwvGl+aGvpG
  Carubv10007070m  92 RLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISNSRLTFATMDGDIHVAEIDG--VGHTRTAYAGDIVNDGALVDFAGCGRWWVGLFAGVPG 183
                      *******************************************************..66*********************************** PP

              SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvv 359
                      rafhiWd+++ee++fvGGsltdPeavmGWh+ltelt+++Gr+r++++etavaCt++r +v+dlrnqgv+++e+ee+ rGl v+++da++++yv+
  Carubv10007070m 184 RAFHIWDCNSEETTFVGGSLTDPEAVMGWHTLTELTTSLGRIRISGNETAVACTRWRTMVIDLRNQGVIIGEDEEQrRGLTVTGFDANEQVYVR 277
                      **********************************************************************99888779**************** PP

              SAP 360 vdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtih 448
                      +dsrG+a+vrrv++ e+vc+frv+g aqr+v+gCvn+  al++aggv+rvWe+e+ e ylys+rervgev+a+vad+rhvav+ss    +++ih
  Carubv10007070m 278 MDSRGNANVRRVNTQETVCEFRVSGaAQRRVMGCVNRLNALMCAGGVMRVWEVERGE-YLYSVRERVGEVEAIVADERHVAVASSsstaQSVIH 370
                      *************************9*****************************77.************************9986777899** PP

              SAP 449 lldfga 454
                      l+dfga
  Carubv10007070m 371 LWDFGA 376
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.8E-5160No hitNo description
SuperFamilySSF813838.94E-6149IPR001810F-box domain
Gene3DG3DSA:2.130.10.102.3E-970157IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.87E-1070247IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-9280374IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.87E-10291373IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
VCTTWQAVSR SDHLWQLLCR QVWARTHLMH DTWRDEFIYR HRTARNFRTR THTYFTLQFD  60
PSDVDEPDSL LCRCLTLSDL YLAAGFADGT VRLFLLNNRL HVRTLRPPLR DRFGRFSRAV  120
SGIVISNSRL TFATMDGDIH VAEIDGVGHT RTAYAGDIVN DGALVDFAGC GRWWVGLFAG  180
VPGRAFHIWD CNSEETTFVG GSLTDPEAVM GWHTLTELTT SLGRIRISGN ETAVACTRWR  240
TMVIDLRNQG VIIGEDEEQR RGLTVTGFDA NEQVYVRMDS RGNANVRRVN TQETVCEFRV  300
SGAAQRRVMG CVNRLNALMC AGGVMRVWEV ERGEYLYSVR ERVGEVEAIV ADERHVAVAS  360
SSSTAQSVIH LWDFGAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007070m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114850.0AB011485.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285619.20.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1I9XFY40.0A0A1I9XFY4_9BRAS; Uncharacterized protein
STRINGCagra.0866s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]