PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007002m
Common NameCARUB_v10007002mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 438aa    MW: 48399.5 Da    PI: 7.1209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007002mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16247294355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++hn  ErrRR++iN+++ +L+el+P +      K +Ka++Le ++eY+ksLq
  Carubv10007002m 247 EMHNLSERRRREKINEKMKTLQELIPGC-----SKKDKASTLEFVIEYVKSLQ 294
                      58*************************9.....799****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-20242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.822244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-13247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-16247298No hitNo description
Gene3DG3DSA:4.10.280.101.4E-20248307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
GEDDIVELLW KSGQVVPSSQ IQRSSSHPLP ILRGSGSGSG EGNDPLPHPT PSLQHHDQQS  60
LFIQEDEMAS WLPHPNRQDY FYSSVSSTPA TLPQILASLA PPPPSIQDIM TPERPTGQIF  120
SGRRAENFMN FSRLRGNICT GGRVEAGPSM QVESSATPSS FATESCVIPA TEGTKSRVLR  180
TFSVPSLGRD EKMASENAGT KPIQTQPASE ISEDRKRKER EETNAEIQGT EEARDSSVTR  240
KKSRAAEMHN LSERRRREKI NEKMKTLQEL IPGCSKKDKA STLEFVIEYV KSLQMQVQMM  300
SMGQGTMPPM MNAGNVQPLM PNMAMRMMDM NRPPFIPFPG TPFPRPPHME GIGPSRPALA  360
PPYPYDPSRV HLRTPQPNLV STQPQFPAYM NPYSQFVGLH RMQQPPTPLH SQTTSPVSFS  420
DGSNSKEHDD QDNQSTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239256RKKSRAAEMHNLSERRRR
2252257ERRRRE
3253258RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007002m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285560.20.0transcription factor bHLH119 isoform X1
SwissprotQ9SVU71e-146BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0H4M40.0R0H4M4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006285560.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-122bHLH family protein