PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10006934m

Common Name

CARUB_v10006934mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 278aa MW: 30572.9 Da PI: 6.2634

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10006934m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.5e-07	50	94	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ RRd++++ f eL l ++ K +K++iL+ +++ +k+ Carubv10006934m 50 KAEREKLRRDKLKEQFLELGNALDPN----RHKSDKVSILTDTIQMLKD 94 589******************997....689*********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-13	44	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.306	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-4	48	100	No hit	No description
Pfam	PF00010	1.1E-4	50	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-11	50	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-6	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDQSKKPKTC SDSDFADDSS ASSSSSSTSG HNLRAEIVVE VNKEAVCSRK AEREKLRRDK 60 LKEQFLELGN ALDPNRHKSD KVSILTDTIQ MLKDVMNQVE RLKAEYATLS QESRELIQDK 120 SELREEKATL KSDIEILNAQ YQHRVRSMVP WIPHYTYPIP VVALSQGQST FIPYSASVVN 180 PLIEQASIQQ RSSSSGASSK QNSKSKSFSL DQGNDHKDDV GLELELKIHA SPLAQQDVSG 240 KENKESLTPT ANSSNSYSSS QTVQDSSPGG VNDILKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10006934m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493720	1e-168	AB493720.1 Arabidopsis thaliana At4g36060 mRNA for hypothetical protein, partial cds, clone: RAAt4g36060.
GenBank	AF251696	1e-168	AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285497.1	0.0	transcription factor bHLH11 isoform X1
Swissprot	Q8W2F2	1e-136	BH011_ARATH; Transcription factor bHLH11
TrEMBL	R0H1A0	0.0	R0H1A0_9BRAS; Uncharacterized protein
STRING	XP_006285497.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	1e-119	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10006934m
Entrez Gene	17880513

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]