PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006881m | ||||||||
Common Name | CARUB_v10006881mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 22131.3 Da PI: 5.0164 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.4e-05 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Carubv10006881m 46 YTCNFCRREFRSAQALGGHMNVH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.23E-6 | 43 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 44 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0073 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-5 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.198 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNGGAWMWNP NKIEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA 60 LGGHMNVHRR DRASSRAHQG HTAAAAARSN SGGTLLNPCA PTLPTLIIQS TSSNIEGLSH 120 FYQLQNPNGI FGNSGDMMNL YGTTSFPSSN HSFSVLNSPV EVPPRLIDYS TGDDESIGSM 180 KETTGTSVDE LDLELRLGHN PP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006881m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161547 | 0.0 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | BT010828 | 0.0 | BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds. | |||
GenBank | BT011301 | 0.0 | BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | HM453334 | 0.0 | HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds. | |||
GenBank | Z97344 | 0.0 | Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285463.1 | 1e-151 | zinc finger protein 10 isoform X1 | ||||
TrEMBL | R0F9L3 | 1e-149 | R0F9L3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285463.1 | 1e-150 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5284 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-135 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006881m |
Entrez Gene | 17877983 |