PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006710m
Common NameCARUB_v10006710mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 346aa    MW: 39179.8 Da    PI: 9.3283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006710mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19190240256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Carubv10006710m 190 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 240
                      59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-31189249No hitNo description
Gene3DG3DSA:3.30.730.108.1E-32190248IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23190248IPR016177DNA-binding domain
SMARTSM003807.6E-35190253IPR001471AP2/ERF domain
PROSITE profilePS5103222.682190247IPR001471AP2/ERF domain
PfamPF008471.4E-12191240IPR001471AP2/ERF domain
PRINTSPR003673.5E-11191202IPR001471AP2/ERF domain
PRINTSPR003673.5E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEQFPKIET SFMHDKLLSS GIYGILSSSP PPQLLGVPIF LEGMKSPLLP PPSSTPSYFL  60
SPPHDHELTS SSLQSPVASV PWNFLESFPQ FDQRPDHDPS KPPNLTLFLK EPKLLELSQS  120
DTNMSPYHKY IPNSLYQSDE TRNEWVEINK TLLTNYPSKG FGNYWLSTTK TQPMKSKTRK  180
VVQTTTPTKL YRGVRQRHWG KWVAEIRLPR NRTRVWLGTF ETAEQAAMAY DTAAYILRGE  240
FAHLNFPDLK HQLKSGSLRC MIASLLESKI QQISSSQVSK SPPQAKVESL ETKNHMKMEP  300
SGEVVMTKKH KSHKEVMEGD GVQLSRMPSL DMDLIWDALS LPHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21189247463ATERF1
3gcc_A6e-21189247463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006710m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285323.10.0ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLR0F9760.0R0F976_9BRAS; Uncharacterized protein
STRINGXP_006285323.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein