PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006623m
Common NameCARUB_v10006623mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 354aa    MW: 38722.4 Da    PI: 4.6642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006623mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102833231055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Carubv10006623m 283 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 323
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14275339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12278332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-12282327No hitNo description
PfamPF000101.4E-7283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYNYATE EADFMNQLLA SYDHPGTGSS SGTPGGDHQG LYWGLGSHQN  60
HLSLVSEAGS FCFSQESSSY SAGNSGYYTV VPPAAEENQN GTMDFGMEDV TINTNSYLVG  120
EETSECDVEK YSSGKNLLPL ETVVENRNDE ESLMQSEISV TTTEHQKSLT GSKKRSRATS  180
TDKNKRARVN KKGQKSIDIS GDTNGGEEEE GEKLKKRKNG AMMSRQNSST TFCSEEESNC  240
ADQDGVGEDS SSKDEDPSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQNLV  300
PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPI AFNGMDIGLS SPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006623m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2281100.0AK228110.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18.
GenBankBT0031370.0BT003137.1 Arabidopsis thaliana At4g33880 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282823.10.0transcription factor bHLH85 isoform X1
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLR0F2Y80.0R0F2Y8_9BRAS; Uncharacterized protein
STRINGCagra.1305s0010.1.p0.0(Capsella grandiflora)
STRINGXP_006282823.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.10.0ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]