PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006567m
Common NameCARUB_v10006567mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 229aa    MW: 25345.9 Da    PI: 4.3499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006567mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+ +++g
  Carubv10006567m 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAAMSIKG 67
                     68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-121767IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-201875IPR016177DNA-binding domain
SMARTSM003808.8E-341881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-311876IPR001471AP2/ERF domain
PROSITE profilePS5103222.6031875IPR001471AP2/ERF domain
CDDcd000183.40E-311977No hitNo description
PRINTSPR003675.8E-101930IPR001471AP2/ERF domain
PRINTSPR003675.8E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEDSSSEKEK KESSKQPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAMRAHDV  60
AAMSIKGTSA ILNFPELSDF LPRPVSLSPR DVRAAATKAA LMDFDTTPLR SEAETSETTT  120
DKRSESSETG ETTSNKSSES SETASFSSFS VTSIEESAVS DDLEEIVELP SLGTSLNESN  180
EFVCFDSLEE LVYMPPWLTG TEADDFTYNN NASSSLNSSV FESWKHFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1819761573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006567m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615821e-137AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0889181e-137AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBankBT0029241e-137BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankBT0043431e-137BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankCP0026871e-137CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282817.11e-164ethylene-responsive transcription factor ERF043
SwissprotQ9M0801e-115ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLR0GTR81e-162R0GTR8_9BRAS; Uncharacterized protein
STRINGXP_006282817.11e-163(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.19e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]