PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10006284m | ||||||||
Common Name | CARUB_v10006284mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 161aa MW: 18483.1 Da PI: 10.2509 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.6e-15 | 30 | 75 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg WT+ d++l+++v+ +G ++W++I ++m+ Rt+k+c+ rw++ Carubv10006284m 30 RGHWTQSQDLKLIELVEAYGLDNWDLIGEKMQ-ARTGKSCRFRWLNQ 75 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 84 | 127 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T eE+++ v a++ +G++ W++Ia+++ gRt+ ++k++w+ ++ Carubv10006284m 84 PFTVEEEKIMVSAHNFYGNK-WSKIAKHLK-GRTDIDVKNHWNVHM 127 89******************.********9.************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-12 | 29 | 78 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.292 | 30 | 76 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.9E-15 | 30 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.79E-28 | 30 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 31 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-11 | 33 | 74 | No hit | No description |
PROSITE profile | PS51294 | 23.991 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 83 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-10 | 84 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 84 | 130 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
RPVNGVGANN ALSLRETQQE ERKSPYLGGR GHWTQSQDLK LIELVEAYGL DNWDLIGEKM 60 QARTGKSCRF RWLNQLDPTI NKAPFTVEEE KIMVSAHNFY GNKWSKIAKH LKGRTDIDVK 120 NHWNVHMNRT AWRSQTKTKK RCFTAALNPY GYHVPGMCLL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 30 | 129 | 7 | 106 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 113 | KHLKGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10006284m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284977.2 | 1e-116 | transcription factor MYB117 | ||||
Swissprot | Q9LQX5 | 2e-38 | MY117_ARATH; Transcription factor MYB117 | ||||
TrEMBL | R0GZW9 | 1e-118 | R0GZW9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006284977.1 | 1e-119 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17330 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39700.1 | 1e-53 | myb domain protein 89 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10006284m |
Entrez Gene | 17880287 |
Publications ? help Back to Top | |||
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