PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G39700.1 | ||||||||
Common Name | AtMYB89, MYB89 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 22676.1 Da PI: 10.2984 | ||||||||
Description | myb domain protein 89 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.6e-13 | 57 | 101 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT Ed++l+++v+ +G+ +Wk I ++m Rt +c+ rw++ AT5G39700.1 57 GHWTLSEDLKLKELVAVFGPQNWKFIGEKME-PRTSLSCRQRWFNQ 101 68*****************************.9**********996 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.4e-17 | 109 | 153 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T eE+e+l++a+ ++G++ W++Ia+ ++ +Rt+ +k++w++++ AT5G39700.1 109 RNFTDEEEEKLLRAHILYGNK-WSKIAKLFN-RRTDHAVKNHWHSLM 153 68*******************.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.718 | 51 | 102 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-26 | 55 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-12 | 55 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 57 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-12 | 57 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-10 | 59 | 100 | No hit | No description |
PROSITE profile | PS51294 | 25.967 | 103 | 157 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-15 | 107 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 110 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 110 | 155 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MYLFMYKCNI VLEETHVFQN TPCDVSLQRP FNGFGENNAL PLRKMHQEEK KKKHRGGHWT 60 LSEDLKLKEL VAVFGPQNWK FIGEKMEPRT SLSCRQRWFN QLDPKINKRN FTDEEEEKLL 120 RAHILYGNKW SKIAKLFNRR TDHAVKNHWH SLMNRIIRKQ SASDIRSFDN IQNYQTSNFL 180 PGLCLLNTKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-26 | 57 | 157 | 5 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-26 | 57 | 157 | 5 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-26 | 57 | 157 | 5 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5823322 | 0.0 | ||||
Genevisible | 249414_at | 0.0 | ||||
Expression Atlas | AT5G39700 | - | ||||
AtGenExpress | AT5G39700 | - | ||||
ATTED-II | AT5G39700 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB89). | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G39700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G39700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175995 | 0.0 | AF175995.1 Arabidopsis thaliana putative transcription factor (MYB89) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_568569.1 | 1e-142 | myb domain protein 89 | ||||
Swissprot | Q9SEZ4 | 2e-46 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A178UAD5 | 1e-140 | A0A178UAD5_ARATH; MYB89 | ||||
TrEMBL | Q9SPG4 | 1e-140 | Q9SPG4_ARATH; Myb domain protein 89 | ||||
STRING | AT5G39700.1 | 1e-141 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT5G39700.1 |
Entrez Gene | 833966 |
iHOP | AT5G39700 |
wikigenes | AT5G39700 |