PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006208m
Common NameCARUB_v10006208mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 188aa    MW: 20920.7 Da    PI: 6.9468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006208mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-192676256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr +  +g+Wv+eIr+p+    + kr++lg+++ +e+Aa+a++aa  +++ge
  Carubv10006208m 26 CYRGVRKRA-WGKWVSEIRVPK----TgKRIWLGSYDAPEKAARAYDAALFCIRGE 76
                     8*****887.**********95....35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-352689IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-212684IPR016177DNA-binding domain
PROSITE profilePS5103222.0762683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-282684IPR001471AP2/ERF domain
PfamPF008477.0E-122676IPR001471AP2/ERF domain
PRINTSPR003672.1E-92738IPR001471AP2/ERF domain
CDDcd000184.67E-322785No hitNo description
PRINTSPR003672.1E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPPSPPKSPF IRSSPKEAHE DRRFKCYRGV RKRAWGKWVS EIRVPKTGKR IWLGSYDAPE  60
KAARAYDAAL FCIRGEKGVF NFPTDKKPQL PEGSVRPLSK HDIQTISTNY ASSVVHVPSH  120
ATTLPLAAQV PSEVSASPDV SASTEITEVV DEYYLPTDAT AESIFSVEDL QLENFLMMDI  180
DWINNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1627851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006208m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221980.0AL022198.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project).
GenBankAL1615780.0AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankBT0117740.0BT011774.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankBT0123990.0BT012399.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284912.11e-137ethylene-responsive transcription factor ERF015
SwissprotQ6NLD51e-125ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLR0GZQ71e-136R0GZQ7_9BRAS; Uncharacterized protein
STRINGCagra.0380s0018.1.p1e-137(Capsella grandiflora)
STRINGXP_006284912.11e-137(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-128ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]