PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006025m
Common NameCARUB_v10006025mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 127aa    MW: 14926.1 Da    PI: 10.2197
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006025mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind58.32.1e-18121032100
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F +++y+++ed++ +++isw +++nsfv+++ eef+++ +   F  s+f+ F   L  YgFk++k+ +++        e+ ++ F +g+ e l+
  Carubv10006025m  12 FHMRIYKVVEDPSSDSVISWGKDNNSFVIWNLEEFTRRDIVGDFDCSRFSEFRSELRYYGFKRIKKGSGE-------LEYGNEDFVRGQPERLK 98 
                      7889****************************************************************99.......***************99 PP

                      XXXXX CS
     HSF_DNA-bind  96 kikrk 100
                      ++  k
  Carubv10006025m  99 TMMIK 103
                      87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-22797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-238103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-219100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-1712100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-56375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALNFPKGVS VFHMRIYKVV EDPSSDSVIS WGKDNNSFVI WNLEEFTRRD IVGDFDCSRF  60
SEFRSELRYY GFKRIKKGSG ELEYGNEDFV RGQPERLKTM MIKAWRKNKA KFKARKAAEE  120
LQRLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006025m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284760.13e-89heat stress transcription factor A-1
TrEMBLR0H2D46e-88R0H2D4_9BRAS; Uncharacterized protein
STRINGXP_006284760.11e-88(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-39HSF family protein