PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005860m
Common NameCARUB_v10005860mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 179aa    MW: 19394 Da    PI: 10.6175
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-183670135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Carubv10005860m 36 CVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQ 70
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.1893085IPR000679Zinc finger, GATA-type
SMARTSM004017.6E-113082IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-123169No hitNo description
Gene3DG3DSA:3.30.50.109.3E-153470IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-103569No hitNo description
PfamPF003205.0E-163670IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403661IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSEETKTKLE SAGDLSDVDN GNCSSSGSGG DTKKTCVDCG TSRTPLWRGG PAGPKSLCNA  60
CGIKSRKKRQ AALGIRQEDN KIKNKTSSNN LNLENRNVKI GKAEAGNVKN RIIKTDSESY  120
SNTNNNNSKK NVKRVSRFLD LGFKVPAMKR SAVEKKRLWR KLGEEERAAV LLMTLSCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005860m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190211e-101AK119021.1 Arabidopsis thaliana At4g16141 mRNA for unknown protein, complete cds, clone: RAFL21-34-K14.
GenBankAK2280251e-101AK228025.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL14-54-B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284629.11e-125GATA transcription factor 17
SwissprotQ9LIB52e-68GAT17_ARATH; GATA transcription factor 17
TrEMBLR0F6T51e-124R0F6T5_9BRAS; Uncharacterized protein
STRINGXP_006284629.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.11e-75GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]