PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10005611m | ||||||||
Common Name | CARUB_v10005611mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 27187.2 Da PI: 5.0992 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.8 | 1.5e-18 | 172 | 206 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ +Tp+WR gp g ktLCnaCG+++++ +l Carubv10005611m 172 CSHCGVEETPQWRMGPLGAKTLCNACGVRFKSGRL 206 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 7.2E-83 | 1 | 242 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 4.5E-14 | 166 | 220 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.147 | 166 | 202 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-13 | 169 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.8E-14 | 170 | 204 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 172 | 197 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-16 | 172 | 206 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.55E-14 | 172 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MECVEALLAD FSVDDLFDFS NADTAFIRED ESSSSQREEG EEDEQERDKA KSLSDQSTHL 60 SPLEDLLSFP RDDVPSVKAG DLENLEWLSK FVEDSFSESY LSGDFPVSVD EAQNQRQCVP 120 AKPRSKRRRT NGRIWSLEST SPLLPTAVSG KKKRGKHTAE VSSGDGVQQR CCSHCGVEET 180 PQWRMGPLGA KTLCNACGVR FKSGRLLPEY RPACSPTFST EIHSNSHRKV LELRLMKSAD 240 PGRV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10005611m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284437.1 | 1e-180 | GATA transcription factor 7 | ||||
Swissprot | O65515 | 1e-124 | GATA7_ARATH; GATA transcription factor 7 | ||||
TrEMBL | R0GYE7 | 1e-179 | R0GYE7_9BRAS; GATA transcription factor | ||||
STRING | XP_006284437.1 | 1e-179 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14654 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 1e-117 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10005611m |
Entrez Gene | 17877832 |
Publications ? help Back to Top | |||
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