PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005152m
Common NameCARUB_v10005152mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 352aa    MW: 39162.8 Da    PI: 4.8673
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005152mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17242276135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Carubv10005152m 242 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 276
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-10138332IPR016679Transcription factor, GATA, plant
SuperFamilySSF577164.37E-15235298No hitNo description
SMARTSM004016.7E-17236286IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.044236272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-14239274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.87E-14241288No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003203.1E-15242276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
TLLSLSPALL FFSPLHSSLT PPKKVSSFLH LLCFFPLMER LASELFLVAG NTDSFVVDDL  60
LDFSNDDGQV DDGQVDDAFD TFLPDSSTVT LADSSNSSSS FFVDSSTGFS GDLCIPSEDL  120
AELEWLSNIV EETFSEEDQD KLHLLSGLKN PQTIGPTQTH QIKPEPEPDF DQFIDTDESN  180
VAVPAKARSK RSRSAASTWA SRLLSLADSS DESNPKKKQR RVANEQDTAV DMDVDCGGGR  240
RCLHCATEKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPASSPTFVM ARHSNSHRKV  300
MELRRQKEMR DEHVMSQLRC ENLMMDIRSN GEDFLIHDNN NHVAPNFRRL I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214220PKKKQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005152m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284030.20.0GATA transcription factor 9
SwissprotO826321e-178GATA9_ARATH; GATA transcription factor 9
TrEMBLR0H0E90.0R0H0E9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006284030.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-139GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]