PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004944m
Common NameCARUB_v10004944mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 408aa    MW: 44513.9 Da    PI: 5.107
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004944mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.25.2e-33209304296
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                      lf+r+wseeDei+lL+G++d++++tgk + +d+++ +e+vk+sisf+vs sq+++K+++LK K+ kk +k ++ g++ + + +hd+k+fel+k+
  Carubv10004944m 209 LFKRIWSEEDEILLLKGMVDYRSSTGKTALEDVNGYFETVKNSISFEVSISQFSSKVKSLKGKYLKKITKmKDAGESSVKKDPHDRKCFELAKI 302
                      69*******************************************************************94556677777889**********9 PP

           DUF573  95 iW 96 
                      + 
  Carubv10004944m 303 VL 304
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-26210303IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAKKKQSQPL VTPSTAKKPL PVSSTAKKQS QVASTSKQPP ENPSPMKKKP TEIASPVKKP  60
PVLALASTSK NKKQPEPVKI PPPPESSSDE EEEEEEEEGS GSEEEEEEEE PGSEGEEEQD  120
EPVKKVPETA AAPVVSVTNE STDSESESET EGGDSEAEPE QATPLRVAAS PPKKKRQSEA  180
AAATEANPSK RAKTEGESGT ETNNNKNSLF KRIWSEEDEI LLLKGMVDYR SSTGKTALED  240
VNGYFETVKN SISFEVSISQ FSSKVKSLKG KYLKKITKMK DAGESSVKKD PHDRKCFELA  300
KIVLGDYVGS TKTAVVKSTR RKIKLDNGSS KAGDAEWFGN SFIIRAITSY GPVADEEAVM  360
GKWSLVPVKM KKKIEEKYKL LKADELKVFL LKNEILNDVS SEISKFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004944m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634348.10.0probable transcription factor At4g00610
TrEMBLR0GZX60.0R0GZX6_9BRAS; Uncharacterized protein
STRINGXP_006283845.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.15e-35DNA-binding storekeeper protein-related transcriptional regulator