PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004840m
Common NameCARUB_v10004840mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 436aa    MW: 48842.4 Da    PI: 5.4491
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004840mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35371282102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++ +isw +++nsf+v++e+ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv++ +         +e++++ F +g+k+ll+
  Carubv10004840m  37 FLSKTYDMVEDPATDAIISWGSDNNSFIVWNESEFSRHLLPKHFKHNNFHSFVRQLNTYGFRKVDQGR---------QEYANEDFLRGEKHLLK 121
                      9***************************************************************9998.........57*************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      ki r+ks
  Carubv10004840m 122 KISRRKS 128
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.7E-5333126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3734126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3334126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-183760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDGGVVTGGV ANSGESVPPR NPHPATLLSA NDLPPPFLSK TYDMVEDPAT DAIISWGSDN  60
NSFIVWNESE FSRHLLPKHF KHNNFHSFVR QLNTYGFRKV DQGRQEYANE DFLRGEKHLL  120
KKISRRKSVQ GHGSSLSQGQ SSMAAVEVGR FGIDEEVEQL KRDKNVLMQE LVKLRQQQQT  180
TDSKLQVMVK RLQVMELRQK QIMSFFAKAV QNPTFLSHFI QKQTDNNILV TEANKKRRLR  240
EDTATENHSS AASDGHGQIV KYQPRRSDSM MWSRMKNDDE YSYLDGFASP DRVSGCTLQE  300
VLPTTSGQSH AYAPAASGQH LSYLPSTSTS LPDTVMPTIH RMPQSRDSIN DFPTEDYMDT  360
EKNVSEPFIS PSPFLDGGSV PIQVDGILED PDIGELLSSF DFLEECLTES PVLGDATTLE  420
NSNNTNGRYM DKFIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2441261129Heat shock factor protein 1
5d5v_B1e-2441261129Heat shock factor protein 1
5d5v_D1e-2441261129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004840m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283759.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLR0F4J60.0R0F4J6_9BRAS; Uncharacterized protein
STRINGXP_006283759.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]