PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004543m
Common NameCARUB_v10004543mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 541aa    MW: 58804 Da    PI: 5.2622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004543mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30299357259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Carubv10004543m 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 357
                      7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-33284359IPR003657WRKY domain
SuperFamilySSF1182902.48E-27291359IPR003657WRKY domain
PROSITE profilePS5081128.908293359IPR003657WRKY domain
SMARTSM007741.6E-35298358IPR003657WRKY domain
PfamPF031062.6E-26300357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEGRHDQI TPLDEHRVVV DEVDFFSEKR ARVSRENIND AEDDEEADKV  60
HVKMENSRVE ENDRSRDVNI GLNLLTANTG SDESTVDDGL SMDMEDKRAK IENAQLQEEV  120
NKMKIENQRL RDMLSQATNN FNALQNQLVG VMRQQEQRNS SQDHLLATEG KAEGRNRQEL  180
QTMVPRQFMD LGPSSGAAEH EAEVSSEERT MIHSASPPSL LESSNLRENG KRLLGREESP  240
EESESNAWGN PNKVPKHNSS SSNNNNNGNG NVIDQSAAEA TMQKARVSVR ARSEAPMISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMAGAC PVRKQVQRCA EDRSILITTY EGNHNHPLPP  360
AAMAMASTTT AAASMLLSGS MSSQDGLMNP TNLLARAILP CSSSMATISA SAPFPTITLD  420
LTNSPNGNTP NMTTNNPLMQ FAQRPGFNPA VLPQVVGQAL YYNQQQSKFS GLQLPAQPLQ  480
IPATSSVSES VSAASAAIAS DPNFAAALAA AITSIMNGSS HQNNNTNNNN VATSNGDNRQ  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23285361176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004543m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633874.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGXP_006283491.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31