PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004540m
Common NameCARUB_v10004540mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 541aa    MW: 59768.4 Da    PI: 5.4917
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004540mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.52.3e-26297350256
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      ++++WtpeLH++Fv+aveqL G+++A+P++ilelmkv  Lt+++v+SHLQk+R++
  Carubv10004540m 297 KKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVSNLTRHNVASHLQKFRIH 350
                      689*****************.********************************86 PP
2Response_reg281.1e-103913314109
                      HHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--H CS
     Response_reg  14 lrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdp 104
                       r++le+++y +v++++d +eal  l ++   +++ l  ++     +G+++l+     ++ lp i++++    +++ +++ +Ga +fl Kp  p
  Carubv10004540m  39 TRSMLESADY-IVTTFTDETEALSALFKNPesFHIALAEVNTNAeKEGFKFLEAA---KDILPTIMISTDHCIATTMKCIALGAVEFLQKPLTP 128
                      6899******.************999555556*********99988999998764...4578******************************** PP

                      HHHHH CS
     Response_reg 105 eelvk 109
                      e+l +
  Carubv10004540m 129 EKLKN 133
                      **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.27725139IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-738133IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.98E-1338140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-1439166No hitNo description
CDDcd001561.76E-840138No hitNo description
PROSITE profilePS5129416.06293352IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-25294352IPR009057Homeodomain-like
SuperFamilySSF466892.96E-18295353IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24297350IPR006447Myb domain, plants
PfamPF002493.5E-7299347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVITANDLSK WENFPKGLKV LLLLNGDDDG GDGFSAAETR SMLESADYIV TTFTDETEAL  60
SALFKNPESF HIALAEVNTN AEKEGFKFLE AAKDILPTIM ISTDHCIATT MKCIALGAVE  120
FLQKPLTPEK LKNIWQHVVH KAFNDGGSNV SGSLKPVKES VVSMLHLDTD MTIDEKDPAP  180
STPQLTQVSR LLDGNCQENI NCSMENVNSS TEKDNMEDQD IGESKLVDTT NPESEDDKVV  240
VKEERGDSEK EEEGETGDLE SEKTDSVNCH KKEDEAKPVN KSSGIKNLSG NNKTSRKKVD  300
WTPELHKKFV QAVEQLGIDQ AIPSRILELM KVSNLTRHNV ASHLQKFRIH RRNILPKEDH  360
NQRWAQSREN QRPIQRNNNG FQQHQRPVMA YPVWGLPSMH PPPGAIPPLW PPPLHCAGQP  420
PPWHWKPPYP TVNGNAWGCP VGPPVNGSYY TPPNITAGGF QYTNGVETAF KLMPATQPDE  480
EMLDQVVKEV VSKPWLPLPL GLKPPSAESV LTELSRQGIP AVPASSSSSC LLTNGSHRLR  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15298349758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004540m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283488.10.0two-component response regulator-like APRR2
RefseqXP_023634885.10.0two-component response regulator-like APRR2
RefseqXP_023634886.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLR0F4Q40.0R0F4Q4_9BRAS; Uncharacterized protein
STRINGXP_006283488.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]