PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004442m
Common NameCARUB_v10004442mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 584aa    MW: 65754.2 Da    PI: 9.4973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004442mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296283223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     kC++C++ F ++ n++rH r+H
  Carubv10004442m 62 KCEKCSREFCSPVNFRRHNRMH 83
                     7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9286188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDSGKERDAL GAFWNKLSAI DAKEILSLKS  120
MMLEDVPGAS VESGLMSLIE KPGYTALPQY YLRAGSGILD VLQSRPPRFP VSSQELFSIL  180
DDASEKTFLS NEAAPMQKYI FDGEIGKSVL EAKNVIACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQREKEQK KDAKEVESTT SEEQQYPAES  300
SSQLSVASDS EAQRPDSISI DASSSLEDPQ VLETNNGRND ECQAPIVDDD GFANGQNMER  360
QNGRRSNGFH ANHAPKLGNM RKNGINRDTR VNTAKVWSRK LDNPRLISQH AAVTQLDQTR  420
NGDLLIGSVS LTIQKGSFSG EHNQPKCSEA ERRTKTVEVK PISEQATIKI WRPVSSQGRK  480
VSAVHENADK EDKNSNPTAP EVKTAQHHIS LQFNNHKAKA FLAERWKEAT SAEHVTLVLS  540
QETYISGNNT HESSNGVINA RPKPRMKPEK GTKVKYVPKQ RIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268ERKKRKKL
2263267KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004442m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283401.10.0uncharacterized protein LOC17880604
RefseqXP_023633838.10.0uncharacterized protein LOC17880604
TrEMBLR0GHK90.0R0GHK9_9BRAS; Uncharacterized protein
STRINGXP_006283401.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein