PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10004390m | ||||||||
Common Name | CARUB_v10004390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 616aa MW: 67516.4 Da PI: 7.482 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 267 | 324 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++++i+Y+g+H+h+k Carubv10004390m 267 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 324 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.6 | 1.2e-33 | 438 | 496 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Carubv10004390m 438 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 496 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.388 | 261 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-25 | 264 | 325 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 265 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-34 | 266 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-24 | 267 | 323 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-37 | 423 | 498 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-29 | 430 | 498 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 433 | 498 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-39 | 438 | 497 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-26 | 439 | 496 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MGVNFFLLSL IIIFTDAAEI HRELIKLSIR HSCERASSPS PIPLLASFFH LLGNPSEMNP 60 QANGRKEFQV DSSAAGDLTA RHDSSGGGGG ARYKLMSPAM LPISRSNADI TIPPGLSPTS 120 FLESPVFISN IKPEPSPTTG SLFKPRPVHI SASPSSYTGR AFHQNTFTEQ KSSEFEFRPP 180 ASNMVYAEVG KHRSEPPLQF QGQGHGSSHS PSSISDAAGS SSELSRPTPP RQMTSTSSDI 240 LAGSDQDESI QTSQNDSRGS TPSILADDGY NWRKYGQKHV KGSEFPRSYY KCTHPNCEVK 300 KLFERSHDGQ ITDIIYKGTH DHPKPQPGRR NSGGLGMAAQ EERLDKYPSS TGRDEKGSGV 360 YNVSHPNEQA GNPEIPHTTT TDDGGEAAAS NKNKDDPEDD DPFSKRRRMD GVMEITPLVK 420 PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAAGCP VRKHVERASH 480 DPKAVITTYE GKHNHDVPTS KSSSNHDIQP RFRPDETDTI SLNLGVGISS DGPNHTSNEH 540 QHQNQQLVNQ SHPNGVNFRF VHASPMPSYY ASLNSGMNQY GPRETKNETQ NGDISSLNHS 600 SYPYPPNIGR IQSGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 265 | 498 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 265 | 498 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10004390m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF425837 | 0.0 | AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds. | |||
GenBank | AJ630479 | 0.0 | AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633666.1 | 0.0 | probable WRKY transcription factor 20 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | R0GYJ6 | 0.0 | R0GYJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006283345.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3133 | 28 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10004390m |
Entrez Gene | 17878450 |