PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004175m
Common NameCARUB_v10004175mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-PHD
Protein Properties Length: 788aa    MW: 89010.9 Da    PI: 4.7009
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004175mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-10462506953
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      k  +e L  +F++n  ps++ r +L+k+l+L+ ++V+ WF+N R+
  Carubv10004175m 462 KAAVEKLRLVFAENELPSKAVRDRLSKELSLDPEKVSKWFKNSRY 506
                      667899*************************************97 PP
2PHD40.75.6e-14192247151
                      SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C++ ++  e++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Carubv10004175m 192 FCAECNSREAflENDIILCDgTCNRAFHQKCLDPPLETENIPPGdqGWFCKVCDCK 247
                      6999***55556********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.38E-14184249IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.1E-12188247IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.896190247IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-9192245IPR001965Zinc finger, PHD-type
CDDcd155045.28E-30192244No hitNo description
PfamPF006284.1E-11192247IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590193244IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.1E-12440505IPR009057Homeodomain-like
SuperFamilySSF466893.68E-10449515IPR009057Homeodomain-like
PROSITE profilePS5007112.633451511IPR001356Homeobox domain
SMARTSM003891.5E-10453515IPR001356Homeobox domain
CDDcd000863.82E-8454506No hitNo description
PfamPF000467.9E-8462506IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MEEIETKGRI TRETTEKACV SVQRIGSTLL SSLVKKGKET SNKRNPKPNK RKTEEELCSK  60
SRNKKCSRGW VHCEEKEEKG KKTRKRKSKR QQKDNKVEVD DSLRLQRRTR YLLIKMKMQQ  120
NLIDAYATEG WKGQSREKIR PDKELERARK QILNCKLGLR DAIRQLDLLS SVGSMEDKAI  180
APDGSIHHDH IFCAECNSRE AFLENDIILC DGTCNRAFHQ KCLDPPLETE NIPPGDQGWF  240
CKVCDCKMEI IDTMNAQIGT HFPEDSNWQD IFKEEASLPI GSEAGLNNEA DWPSDDSKDD  300
DYDPEMRENG VGSSSNVSGG GVGDNDGESM STSVSLSSDG VALSTGSWEG NGFSNMMDQC  360
ETSNEETVCG PRQRRTVDYT KLYYEMFGKD AVMQEQGSED EDWGPNDRRR RKKESDVTSN  420
PVSMCESSKK DQVAIQIPEQ SERVSASVED KGGRRPMFRL PKAAVEKLRL VFAENELPSK  480
AVRDRLSKEL SLDPEKVSKW FKNSRYMALR NRRAESVKQP EHSKMVSGPE AVMETNTDTN  540
EAQNTLEETF PPGYNDFVTN QKTISPSNNN QEVPEDTKTV SGGDSGPEAV MENNIDANEV  600
QDTLDETVPP GFNDSATSQK ILSPCNNNQE EIQQANVSYP TLTVETQQYL EQNDSSFALV  660
PHEELSSEIS LKTAVKEKET ESKTNKEPHE ELRSEMSLKV AEEEEEETES KMTGEEEETE  720
SKMTEEEAFE AVMEMLCRTE NKLLDVTQRL ERFKTPKGRK RLGKSSSSLL EEDSVVYVPI  780
AEIMEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287TRKRKS
2408413RRRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10004175m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283148.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLR0F3V50.0R0F3V5_9BRAS; Uncharacterized protein
STRINGXP_006283148.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]