PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10003813m

Common Name

CARUB_v10003813mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 354aa MW: 39001.6 Da PI: 4.8139

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10003813m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.1	6.6e-34	36	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aC+++rr+C++dC+++ y+p++++++f nvh+lFG +nv +l k++p e r dam+s+vy++++r r P +G+v vi++l q++ ++ el Carubv10003813m 36 PCPACRYQRRSCKPDCIFRLYLPSNRRQDFLNVHRLFGIRNVKNLFKKTPLELRGDAMKSIVYQSNVRSRFPSHGCVHVIRHLLYQIKLVADEL 129 7********************************************************************************************* PP DUF260 95 allkee 100 a+++++ Carubv10003813m 130 AATRTQ 135 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.327	35	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-31	36	133	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTATNKLVLF LILTSVIILM TSQGTSGVKD GDKIEPCPAC RYQRRSCKPD CIFRLYLPSN 60 RRQDFLNVHR LFGIRNVKNL FKKTPLELRG DAMKSIVYQS NVRSRFPSHG CVHVIRHLLY 120 QIKLVADELA ATRTQLSAAA VSFVNPTAPV DSYDPTATTN NDDFARGVPV NDGTIDLLSR 180 GGPYCDIPYE ERETRPLERT NNSVDQLQQF LLNANDLGSI PNPANDFDFG AVLETSEQRG 240 GAPSRDLTTA NNHDVARGGH VSDGTIGFLS GGGQGRNIRY EECVTEPEKN NNNDVQQIIP 300 NPNDLAVSLS DFDFVADLEA LAAAPPNEIE FDYVFTDAER ALFGIEDSGD KCW*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTATNKLVLF LILTSVIILM TSQGTSGVKD GDKIEPCPAC RYQRRSCKPD CIFRLYLPSN  60
RRQDFLNVHR LFGIRNVKNL FKKTPLELRG DAMKSIVYQS NVRSRFPSHG CVHVIRHLLY  120
QIKLVADELA ATRTQLSAAA VSFVNPTAPV DSYDPTATTN NDDFARGVPV NDGTIDLLSR  180
GGPYCDIPYE ERETRPLERT NNSVDQLQQF LLNANDLGSI PNPANDFDFG AVLETSEQRG  240
GAPSRDLTTA NNHDVARGGH VSDGTIGFLS GGGQGRNIRY EECVTEPEKN NNNDVQQIIP  300
NPNDLAVSLS DFDFVADLEA LAAAPPNEIE FDYVFTDAER ALFGIEDSGD KCW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-21	36	136	11	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-21	36	136	11	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10003813m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	R0H810	0.0	R0H810_9BRAS; Uncharacterized protein
STRING	XP_006286835.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-25	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Carubv10003813m
Entrez Gene	17884583