PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10003716m | ||||||||
Common Name | CARUB_v10003716mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 282aa MW: 32287.6 Da PI: 9.5439 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.8e-19 | 27 | 73 | 5 | 50 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 +k + + +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++ Carubv10003716m 27 SKKKTTMNLSLREQTMFKKASELSILCDIEVCVIYYGRDGELvKTWP 73 4555556699******************************9747887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.3E-8 | 4 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.288 | 27 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-12 | 29 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-14 | 30 | 109 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.49E-18 | 34 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSTKKESKLS VRNQTCFKKP SSLSSVSKKK TTMNLSLREQ TMFKKASELS ILCDIEVCVI 60 YYGRDGELVK TWPEDRTKVR DMAERYSKLD ERVRRKKRTN LSQFLNKKIL NDKKTSFDNK 120 DNKFYEKVLE MQASLETGLR MLQDKLRLLQ PQNQTESDQC RAVSSSTKDP HQQWTKTEQD 180 LSTSSLSQHH QSKFSVFLYN HGNGSFCQLP DSVSSFDPST STTLLGTQGS GLRSNCNNFD 240 LPMVFPPQMQ TQSSLVHFDQ FAGWTQPPSS FVDPMMFSCY N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10003716m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290011.1 | 0.0 | agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9H9 | 1e-115 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0HD69 | 0.0 | R0HD69_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290077.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27070.1 | 1e-100 | AGAMOUS-like 53 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10003716m |
Entrez Gene | 17881971 |
Publications ? help Back to Top | |||
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