PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003484m
Common NameCARUB_v10003484mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 395aa    MW: 45295.9 Da    PI: 9.1952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003484mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05146169123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+++F ++ nL +H +  H
  Carubv10003484m 146 YFCGVCDRRFYTNVNLINHFKQiH 169
                      78*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.0E-4125165IPR029060PIN domain-like
SuperFamilySSF576672.47E-5138181No hitNo description
PROSITE profilePS5015710.762146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
CDDcd061677.11E-12212298No hitNo description
PfamPF019362.4E-6217299IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.0E-4231298IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
FRFWIRVGYV NSRILFEASV VSVNSRIPTM FSRFVQRIRS PKTQITSLSS IKGFSFSFSS  60
INPKPQIRTG LFWDLDNKPP ASFPPYDAAV KLRTAASSFG FVKLMVAYAN RHAFSYVPVV  120
VREQRTARKV LNELENTGLV KPPEPYFCGV CDRRFYTNVN LINHFKQIHE TEHQKRMRQI  180
ESSKGHQRVR LVAKYSMKIE KYKRAARKIL TPKEGYGLAD ELKRAGFWVK MVSDKPEAAD  240
IALKEHMVNV MDKREVECVV LVSDDFGYAD VLREAKERCL RTVVIGDLNE GALKRVADVS  300
YSWKEVVMGK AKKEVEKVVG KWKDRDVLKT LEWTYDPALE KERGGSCGVW DYDFDYDDDE  360
IENGTEVEPV EIGDGGDWWK IDNEDCVGSS RPCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003484m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankBT0054090.0BT005409.1 Arabidopsis thaliana clone U51152 unknown protein (At4g12240) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289872.20.0uncharacterized protein LOC17883862
TrEMBLR0HCK60.0R0HCK6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289872.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein