PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003136m
Common NameCARUB_v10003136mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 229aa    MW: 25114.9 Da    PI: 5.1376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003136mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-194494155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Carubv10003136m 44 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 94
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-134494IPR001471AP2/ERF domain
SMARTSM003803.4E-3645108IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103223.45945102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3245103IPR001471AP2/ERF domain
CDDcd000185.35E-3246104No hitNo description
PRINTSPR003672.3E-104657IPR001471AP2/ERF domain
PRINTSPR003672.3E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAEEYYSLRS ERVPQLLVPN SESDSASDKN EKKTKRARDS GKHPVYRGVR MRNWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGTSAILN FPELADSFPR PVSLSPRDIQ  120
TAALKAAHME PTTTSFSSST SSSSSLSSTS SLESLVLVRT ESEELGEIVE LPSLGASYDV  180
DSATLGNEFV FSDSVDYCLY PPPWGQSSDD NYGYGVIPNF GHGLSWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18421021172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003136m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638140.0AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project).
GenBankAL1638150.0AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project).
GenBankAY5608510.0AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds.
GenBankAY9401600.0AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289586.11e-166dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-136DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLR0GZX11e-165R0GZX1_9BRAS; Uncharacterized protein
STRINGXP_006289586.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-128ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]